Tikhonov Dmitrii Anatol'evich

Publications in Math-Net.Ru

1. Biogels. On comparison of structure differences in anti-parallel and parallel complexes of the $H-(RADA)_4-OH$ peptides
   
   Keldysh Institute preprints, 2019, 072, 24 pp.
2. On the correlation of time series in ecology of aquatic systems
   
   Keldysh Institute preprints, 2019, 049, 17 pp.
3. The study of interhelical distances of helical pairs in protein molecules
   
   Keldysh Institute preprints, 2019, 040, 21 pp.
4. Statistical analysis of internal distances of helical pairs in protein molecules
   
   Mat. Biolog. Bioinform., 14:Suppl. (2019),  18–36
5. The study of interhelical angles in the structural motifs formed by two helices
   
   Mat. Biolog. Bioinform., 14:Suppl. (2019),  1–17
6. Database of two-helical motifs of protein molecules and computer services for their analysis
   
   Keldysh Institute preprints, 2018, 185, 16 pp.
7. The study of interhelical angles in pairs of helices in protein molecules
   
   Keldysh Institute preprints, 2018, 176, 25 pp.
8. The study of the torsion angles between helical axes in pairs of helices in protein molecules
   
   Keldysh Institute preprints, 2018, 091, 16 pp.
9. Charge diffusion in homogeneous molecular chains based on the analysis of generalized frequency spectra in the framework of the Holstein model
   
   Keldysh Institute preprints, 2018, 070, 16 pp.
10. Analysis of the areas and perimeters of polygons of the helices projections intersection in helical pairs of protein molecules
    
    Keldysh Institute preprints, 2018, 059, 24 pp.
11. On the choice of force fields for studying the molecular dynamics of ion peptides and their dimers
    
    Mat. Biolog. Bioinform., 13:Suppl. (2018),  29–38
12. Analysis of torsion angles between helical axes in pairs of helices in protein molecules
    
    Mat. Biolog. Bioinform., 13:Suppl. (2018),  17–28
13. Time saving approach to design altered ligand structure
    
    Mat. Biolog. Bioinform., 12:2 (2017),  446–456
14. Analysis of the torsion angles between helical axes in pairs of helices in protein molecules
    
    Mat. Biolog. Bioinform., 12:2 (2017),  398–410
15. The study of interhelical angles in the structural motifs formed by two helices
    
    Mat. Biolog. Bioinform., 12:1 (2017),  83–101
16. Statistical analysis of the internal distances of helical pairs in protein molecules
    
    Mat. Biolog. Bioinform., 11:2 (2016),  170–190
17. Conformational Analysis of Structural Motifs of $\alpha$-$\alpha$-Corner in the Computational Experiment of Molecular Dynamics
    
    Mat. Biolog. Bioinform., 9:2 (2014),  575–584
18. Recognition and Stability Analysis of Structural Motifs of $\alpha$-$\alpha$-corner Type in Globular Proteins
    
    Mat. Biolog. Bioinform., 8:2 (2013),  398–406
19. RISM integral equation theory in study of thermodynamics of self-assembling ionic peptides
    
    Mat. Biolog. Bioinform., 7:2 (2012),  493–507
20. Adiabatic approximation for the calculation of the charge mobility in the DNA Holstein model
    
    Mat. Biolog. Bioinform., 6:2 (2011),  264–272
21. Molecular dynamic of the complexes of $\mathrm{(RADA)_4}$ – the self-organizing ionic peptides
    
    Mat. Biolog. Bioinform., 6:1 (2011),  92–101
22. Considering usage of different force-fields for molecular dynamic studies of the ionic peptides and their dimers
    
    Mat. Biolog. Bioinform., 6:1 (2011),  53–62
23. Numerical analyses of singularity in the integral equation of theory of liquids in the RISM approximation
    
    Computer Research and Modeling, 2:1 (2010),  51–62
24. Method of pseudoaveraged functions in the RISM theory. Temperature dependence of oxytocin peptide hydration
    
    Mat. Biolog. Bioinform., 5:2 (2010),  202–214
25. An averaged over molecular trajectories method of integral equations of the theory of liquids in RISM approximation
    
    Mat. Biolog. Bioinform., 5:2 (2010),  188–201
26. Application of the RISM method to estimate the relative gibbs free energies of 4${}'$,6-diamidino-2-phenylindole binding within the minor groove of a DNA along simulation trajectory
    
    Mat. Biolog. Bioinform., 5:2 (2010),  98–113
27. Determination of the thermodynamic properties of matter from speed of sound measurements
    
    Dokl. Akad. Nauk, 331:3 (1993),  302–305