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JOURNALS // Zhurnal Vychislitel'noi Matematiki i Matematicheskoi Fiziki // Archive

Zh. Vychisl. Mat. Mat. Fiz., 2024 Volume 64, Number 10, Pages 2442–2461 (Mi zvmmf11884)

Papers published in the English version of the journal

A method of boundary equations for nonlinear Poisson–Boltzmann equation arising in biomolecular systems

M. Tavakoli Tameh, F. Shakeri

Department of Applied Mathematics, Faculty of Mathematics and Computer Sciences, Amirkabir University of Technology (Tehran Polytechnic), 15914, Tehran, Iran

Abstract: In this paper, we present a robust and accurate numerical algorithm for solving the nonlinear Poisson–Boltzmann equation, based on the difference potentials method (DPM). First, we remove singularity by a simple regularization technique and employ Newton’s method for linearizing the equation. Then we use the difference potentials method combined with a second-order finite difference scheme and curvilinear approach to solve the problem in the regions with a smooth general-shaped interface. Unlike many other methods, DPM does not need to treat the nonhomogeneous interface conditions resulting from the regularization and can handle discontinuity in the interface without loss of accuracy. In DPM the grid does not need to conform to the boundary or interfaces. This method approximates the resulting equation on a regular structured grid, which entails a low computational complexity, and does not face the challenge of reducing the order of accuracy near the nonconforming interfaces. Several numerical experiments are presented for illustrating the efficiency and accuracy of the developed numerical method.

Key words: difference potential, Taylor expansion, interface problem, nonlinear Poisson–Boltzmann equation.

Received: 17.04.2024
Revised: 05.05.2024
Accepted: 04.12.2024

Language: English


 English version:
Computational Mathematics and Mathematical Physics, 2024, 64:10, 2442–2461


© Steklov Math. Inst. of RAS, 2026